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Taxonomy and Classification

 

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I. Introduction
   
     A. Some Questions
   
          1. How many different kinds (species) of living
               things are found on this planet?
   
          2. How do you study them all, and how do
               you tell others which ones you have
               studied?
   
II. Taxonomy (and Systematics)
   
     A. Taxonomists
   
          1. They Classify Organisms (Classification)
   
          2. They Identify Organisms (Identification)
   
          3. They Name Organisms (Nomenclature)
   
III. Classification
   
     A. Aristotle (384-322 B.C.) ("Father of Biology")
   
          1. You can divide organisms into different
               groups based on certain characteristics, but
               you have to make sure you choose the
               correct characteristics.
   
          2. How do you define each of those groups?
               For example, how many "kingdoms" of
               organisms are there, and how do you
               define them?
   
IV. Two Kingdoms
   
     A. Early Classification Scheme:
          Two Kingdoms
   
          1. Animal Kingdom
   
               a. Characteristics
   
                    i. Move
   
                    ii. Eat other things
   
          2. Plant Kingdom
   
               a. Characteristics
   
                    i. Do not usually move
   
                    ii. Do not usually eat other things
   
                    iii. Are usually green
   
     B. But what about…
   
V. Five Kingdoms
   
     A. Defined by R. H. Whittaker in the 1960s and
          modified by others
   
     B. The Classification Scheme:
          Five Kingdoms
   
           1. The Kingdom Animalia
   
               a. Characteristics
   
                    i. Multicellular
   
                    ii. Eukaryotic
   
                    iii. Heterotrophic
   
               b. Examples
   
                    i. Animals
   
           2. The Kingdom Plantae
   
               a. Characteristics
   
                    i. Multicellular
   
                    ii. Eukaryotic
   
                    iii. Autotrophic
   
               b. Examples
   
                    i. Plants
   
           3. The Kingdom Fungi
   
               a. Characteristics
   
                    i. Multicellular
   
                    ii. Eukaryotic
   
                    iii. Saprotrophic
   
               b. Examples
   
                    i. Fungi (mushrooms, molds, etc.)
   
          4. The Kingdom Protoctista [Protista]
   
               a. Characteristics
   
                    i. Unicellular
   
                    ii. Eukaryotic
   
               b. Examples
   
                    i. Protozoans
   
                    ii. Unicellular algae
   
           5. The Kingdom Prokaryotae [Monera]
   
               a. Characteristics
   
                    i. Unicellular
   
                    ii. Prokaryotic
   
               b. Examples
   
                    i. Bacteria
   
                    ii. Cyanobacteria
   
                    iii. Archaebacteria (*)
   
VI. Six Kingdoms in Three Domains
   
     A. Defined by Carl Woese (and others) in 1990
          (and since)
   
     B. The Classification Scheme:
          Three Domains/Six (or more) Kingdoms
   
          1. Domain Eukarya
   
               a. Characteristics
   
                    i. Eukaryotic cells
   
                    ii. Certain types of membrane lipids
   
               b. Examples
   
                    i. Kingdom Animalia
   
                    ii. Kingdom Plantae
   
                    iii. Kingdom Fungi
   
                    iv. Kingdom(s of) Protista
   
          2. Domain Bacteria
   
               a. Characteristics
   
                    i. Prokaryotic cells
   
                    ii. Certain types of membrane lipids
   
               b. Examples
   
                    i. Kingdom Eubacteria
   
          3. Domain Archaea
   
               a. Characteristics
   
                    i. Prokaryotic cells
   
                    ii. Certain types of membrane lipids
   
               b. Examples
   
                    i. Kingdom(s of) Archaebacteria
   
                         a) Unicellular
   
                         b) Prokaryotic
   
                         c) Chemoautotrophic (mostly)
   
VII. Extremophiles
   
     A. Methanogens
   
     B. Thermophiles
   
     C. Halophiles
   
     D. Life in Space?
   
VIII. Other "Organisms"
   
     A. What About Viruses?
   
          1. Structure
   
               a. Nucleic acid (DNA or RNA)
   
               b. Protein coat
   
          2. Comments
   
               a. Obligate intracellular parasites
   
               b. Infect members of other kingdoms
   
               c. Have their own classification scheme
   
     B. What About Viroids? (1971; Theodore Diener)
   
          1. Structure
   
               a. Nucleic acid (RNA) only
   
          2. Comments
   
               a. Infect plants
   
     C. What About Prions? (Tikva Alper; Stanley
          Prusiner)
   
          1. Structure
   
               a. Protein only
   
          2. Comments
   
               a. Cause neurological disorders
   
                    i. Scrapie
   
                    ii. Mad Cow Disease [Bovine
Spongiform Encephalitis; BSE] iii. Kuru iv. Creutzfeldt-Jakob Disease v. Alzheimer's Disease (?) IX. The Taxonomic Scheme A. The Basic Idea 1. Define groups (taxa) according to common characteristics 2. Place organisms into the taxa based on structural, chemical, evolutionary characteristics B. General Taxa [sing. = Taxon] Domain Kingdom Phylum [Division] Class Order Family Genus Species C. Additional Taxa 1. Super Taxon a. Examples i. Superclass ii. Superfamily 2. Sub Taxon a. Examples i. Subclass ii. Subspecies D. Application to Humans (Simplified) Domain: Eukarya Kingdom: Animalia Phylum: Chordata Subphylum: Vertebrata Class: Mammalia Order: Primates Family: Hominidae Genus: Homo Species: sapiens X. Summary



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Page obtained from link at URL: http://www.ric.edu/faculty/jmontvilo/109.htm Prepared by Jerome A. Montvilo, Ph.D. for the use of his students. Copyright © by Jerome A. Montvilo. All rights reserved. Please send questions, comments, or suggestions to jmontvilo@ric.edu. Last updated 15 January, 2008